Here are two reviews on books that address how God interacts with creation given the discoveries of modern science:
John C. Polkinghorne, Science and Providence: God’s Interaction With the World  (Philadelphia: Templeton Foundation Press, 2005).
I picked up this book in search of perspectives on how God acts in the world. The picture painted by science seems to minimize the need to invoke supernatural causation, and yet as Christians we hold a biblical tradition of Providence, and interpret our daily lives through the lens of God’s intimate concern, involvement, and interaction in our lives and indeed all of creation. Polkinghorne suggests that God operates from behind the veils of quantum mechanics and chaos theory. Sub-atomic physics is viewed (though not by all!) as indeterminate; larger “chaotic” systems such as the weather are also indeterminate; as a result, there is an “openness” to the unfolding process of creation. No one can say with 100% certainty what is going to happen. God can therefore cause whatever he wants whenever he wants by, without violating the laws of conservation, nudging tiny elements here or there within these realms, desiring the chain of events that follows. To me, this view is interesting but ultimately speculative. Worse, Polkinghorne’s argument is maimed by his unwillingness to give up philosophical realism: for him, matter and the laws that govern it are absolute, and God must work around them. There are better perspectives available. What’s important, though, is that Polkinghorne recognizes the problem of divine action and doesn’t offer trite answers for it.
I found Polkinghorne’s writing style often taxing–he cites many bland theological quotations while forbearing to state his own views, and cloaks his prose in the tediously refined style of the academy. Yet there is some silver in his treatise: he exposes what he calls a “facile” and “glib” view of Providence, such that the believer interprets every life event from open parking spaces to rheumatism as direct from the hand of God, sent either as grace or punishment; but on the other hand he defends faith in Providence: “I do not think one can deny that there are remarkable threads of coincidence to be found in human life which it is proper for those who experience them to interpret as the personal God calling them by name.” In the end he endorses a balanced view that justifies thankfulness and prayer–what is at stake–while avoiding the simplistic view of Providence.
Alvin Plantinga, Where the Conflict Really Lies: Science, Religion, and Naturalism (Oxford: Oxford University Press, 2011).
After Polkinghorne, I was curious to see whether a better perspective on the problem of divine action in the world had been articulated. Plantinga devotes attention to this issue in his book Where the Conflict Really Lies, which evaluates real and alleged conflicts between religion and science. In it, he argues that there is no real conflict between theistic religion and science, but that the real conflict is between naturalism and science. Naturalism, the idea that there is no such thing as anything supernatural, is a metaphysical interpretation of or “add-on” to scientific theories like biological evolution. Plantinga takes up the foil against the belligerent atheists, Richard Dakwins and Daniel Dennet, and duels with skillful vigor and a flare of play. A lover of science, Plantinga embraces evolution, and turns it against the naturalist/atheist by arguing in the end that if Mind is the product of unguided natural selection, then our mental faculties are not reliable guides in our search for truth. This undercuts any dogma preached by the naturalist, such as the assertion that “the evidence of evolution reveals a world without design.” As for divine action, Plantinga echoes the notion that there is plenty of room for God to work from behind the shroud of quantum physics–whether to cause genetic mutations, guide evolution, or do the miracles recorded in scripture or prayed for in the present day. Unlike Polkinhorn, Plantinga is not struggling to avoid checkmate, but makes his moves confidently, showing that atheists and evolutionary psychologists have not gained their point against theistic religion in the name of science. I see the book as a whole as a serious challenge to and even firm chokehold on dogmatic naturalism.